Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIRLSKFIKMIVVILFLISVAASFYFFHVAQVRDDKSFISNGQRKPGNSLYAYDKSFDKLLKQKIEMTNQNIKQVAWYVPAAKKTHKTAVVVHGFANSK-ENMKAYGWLFHKLGYNVLMPDNIAHGESHGQLIGYGW----NDRENIIKWTEMIVDKNPSSQITLFGVSMGGATVMMASGEKLPSQVVNIIEDCGYSSVWDE---LKFQAKEMYGLP-A--FPL--L----YEVSTISKIRAGF-SYG----QASSVEQLKKNNLPALFIHGDKDNFVPTSMVYDNYKATAGKKELYIVKGAKHAKSFETEPEKYEKRISSFLKKYEK |
| 2OCG Chain:A ((7-254)) | --------------------------------------------------------------------VAVNGVQLHYQQTGE---GDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMK----ALKFKKVSLLGWSDGGITALIAAA-KYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVK-GSRLHLMPEGKHNLH-LRFADEFNKLAEDFLQ---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2OCG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -41996 for 1950 contacts (-21.5/contact) +
2D Compatibility (PS) -23863 + (NN) -7068 + (LL) 7128
1D Compatibility (HY) -6800 + (ID) 2250
Total energy: -74849.0 ( -38.38 by residue)
QMean score : 0.310
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