Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYKKYQIIYAPDVLEK-LKEIRDYISQNYSSTSGQRKMEQIINDIEK------LEVFP-EVGFDADEKYGSEISNYHSTRGYTLSKDYIVLYHIEEEENRVVIDYL------LPTRSDYMKLFK
3DT5 Chain:A ((15-133))
------RLKAIEDRLEKFYIPLIKAFSSYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIAGSANWTFYAKEDFEQWKEALDVLWEEFLEVLKEYYTLSGTEISLPEKPDWLIGYK
General information:
TITO was launched using:
RESULT:
Template:
3DT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3826 for 660 contacts (-5.8/contact) +
2D Compatibility (PS) -10807 + (NN) 1331 + (LL) 444
1D Compatibility (HY) -4000 + (ID) 1200
Total energy: -18058.0 ( -27.36 by residue)
QMean score : 0.245
(partial model without unconserved sides chains):
PDB file :
Tito_3DT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DT5-query.scw
PDB file :
Tito_Scwrl_3DT5.pdb
: