Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYLSKLSDLDPSLMDADSEQIYIPKVLFEHNDFKGLTYKEILLYSFLLNRLREPLDFIQKGYDDNEDTYVHFKVEDLCELLNQSKTTVISLKKRLAQYGLIEEVKAGSHQPNRIYLTDKLVPYIKG
3CDH Chain:A ((40-106))
-----------------------------------GLRVPEWRVLACLVD--------------NDA-----MMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA-----RVRVRLTDDGRALAES
General information:
TITO was launched using:
RESULT:
Template:
3CDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32959 for 418 contacts (-78.8/contact) +
2D Compatibility (PS) -6711 + (NN) -3763 + (LL) 3560
1D Compatibility (HY) -5600 + (ID) 650
Total energy: -46123.0 ( -110.34 by residue)
QMean score : 0.692
(partial model without unconserved sides chains):
PDB file :
Tito_3CDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CDH-query.scw
PDB file :
Tito_Scwrl_3CDH.pdb
: