Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTVKVVYFSSKSNNTHRFVQKLAWSNQRIPSDGSNILV---------------TEDYILIVPTYAGGGDDTKG----AVPKQVVQFLNVRQNREHCQGVISSGNTNFGDTYAIAGPIIARKLNVPLLHQFELLGTQEDVTRVKELLCQFTRKDK
4N82 Chain:B ((22-174))
--TKVSLVYIS-LSGNTESFVRRLTDYLLEQHPSLEVEKIHIKDLVKERQPFFEMDNPFIAFLPTYLEGGNGVDNGDVEILTTDVGDFIAYGQNASKCLGVIGSGNRNFNNQYCLTAKQYSERFGFPVLADFEMRGMLGDIKKVAGIIEELYHIEK
General information:
TITO was launched using:
RESULT:
Template:
4N82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67755 for 997 contacts (-68.0/contact) +
2D Compatibility (PS) -14795 + (NN) -8593 + (LL) 104
1D Compatibility (HY) -11200 + (ID) 1900
Total energy: -104139.0 ( -104.45 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_4N82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N82-query.scw
PDB file :
Tito_Scwrl_4N82.pdb
: