Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSYIEKIEANKVLDLKQIVPIEEEQMLSKTLVQRKDLGMTVFSLDKGQEIGRHSSPGDAMVNILSGLAQITIDQDKFDVAAGECIVMPANIPHSLYAKEAFQMLLVVVKPEV------------- |
| 2PHD Chain:A ((17-367)) | PKDTPELRALYKSFEEESIIPLWTQLGDLMPIHPKSKAVPHVWKWSTLLRLARKSGELVPVGRGGERRALGLANPGLGGNAYISPTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLDIPFSQQMDVGFFEFGSDTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNGETTKLEKGDMFVVPSWVPWSLQAETQFDLFRFSDAPIMEALSFMRTKIEGQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PHD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44130 for 762 contacts (-57.9/contact) +
2D Compatibility (PS) -11299 + (NN) 5129 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -52650.0 ( -69.09 by residue)
QMean score : 0.464
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