Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDELKKLAGVTAAKYVKNGM----IVGLGTGSTAYFFVEEIGRRVKE-EGLQVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK
4X84 Chain:C ((12-221))
-DQLKQAVAQAAVDHILPHLDSKSIVGVGTGSTANFFIDALARHKAEFDG----AVASSEATAKRLKEHGIPVYELNTVSELEFYVDGADESNERLELIKGGGAALTREKIVAAVAKTFICIADASKLVPILGQFPLPVEVIPMARSHVARQLVKLGGDPVYREG----VLTDNGNIILDVHNLRIDSPVELEEKINAIVGVVTNGLFAARPADLLLLGTADGVKTLK
General information:
TITO was launched using:
RESULT:
Template:
4X84.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76050 for 1795 contacts (-42.4/contact) +
2D Compatibility (PS) -21872 + (NN) -5350 + (LL) 844
1D Compatibility (HY) -14400 + (ID) 3950
Total energy: -120778.0 ( -67.29 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_4X84.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X84-query.scw
PDB file :
Tito_Scwrl_4X84.pdb
: