Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHTQMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIA---ETFSIILDRINQ
3UWO Chain:B ((11-213))
---GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPV--------------LDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLL-----
General information:
TITO was launched using:
RESULT:
Template:
3UWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68234 for 1427 contacts (-47.8/contact) +
2D Compatibility (PS) -20351 + (NN) -9728 + (LL) 2160
1D Compatibility (HY) -13200 + (ID) 4000
Total energy: -113353.0 ( -79.43 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_3UWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWO-query.scw
PDB file :
Tito_Scwrl_3UWO.pdb
: