Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKADKALLIVDMINNFEFDMGETLAKKTEKIVPHILSLKEHARQNEWPIIYINDHYGLWQADIKNIQQEC-TNERSKDIITKIAPVDADYFLIKPKHSAFYETALHTLLTELQVRHIIITGIAGNICVLFTANDAYMREYSITIPKDCIASNSDEDNEFALTMMENVLFAEITTEEQIIEK
3EEF Chain:A ((1-173))
---MKPALVVVDMVNEFIHGR--LATPEAMKTVGPARKVIETFRRSGLPVVYVNDSHYPDDPEIRIWGRHSMKGDDGSEVIDEIRPSAGDYVLEKHAYSGFYGTNLDMILRANGIDTVVLIGLDADICVRHTAADALYRNYRIIVVEDAVAARIDPNWKDYFT---RVYGATVKRSDEIEG-
General information:
TITO was launched using:
RESULT:
Template:
3EEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118829 for 1458 contacts (-81.5/contact) +
2D Compatibility (PS) -17851 + (NN) -5814 + (LL) 760
1D Compatibility (HY) -10800 + (ID) 2350
Total energy: -154884.0 ( -106.23 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_3EEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EEF-query.scw
PDB file :
Tito_Scwrl_3EEF.pdb
: