Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNL------------------------------TPRAASPIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGPTLKRFRPRAMGRASQINKRTSHITIVVSEKKEG
1VQ8 Chain:R ((13-151))
TTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQ-GFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP---
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56287 for 781 contacts (-72.1/contact) +
2D Compatibility (PS) -11484 + (NN) -2301 + (LL) 88
1D Compatibility (HY) -2800 + (ID) 1600
Total energy: -74384.0 ( -95.24 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: