Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----MSAVTESVLESIISPVTMSEFLEEYWPVKPLVARGEVERFTS-IPGFEKVRTLENVLAIYNNPVMVVGDAVIEESEGITDRFLVSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHST---KSDQATLALNITFG----QPAWLDLMLAALRKKLISDNRFRELAVNHQSLHESSKSELNGYLESLIQTLSENAETLTPEQIFQSQDSDFD------------PYQSTQLVFRQLLTSYKF-------------------------------------------------------------------------
2XDV Chain:A ((7-442))PSALNFDSPSSLFESLISPIKTETFFKEFWEQKPLLIQRDDPALATYYGSLFKLTDLKSLC--------------------------------KDFDQKRATIQFHQPQRFKDELWRIQEKLECYFGSLV---GSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHP------------------TVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTAKEDVELRTGIPRQLLLQESTTVATRRLSGFLRTLADRLEGTKELLSSDMKKDFIMHRLPPYSAKLPRLDSVVRLQFKDHIVLTVLPEKMVYIYHSLKNSRETHMMGNHGLRFPLSHLDALKQIWNSPAISVKDLKLTTDEEKESLVLSLWTECLIQVV


General information:
TITO was launched using:
RESULT:

Template: 2XDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1206 30328 25.15 109.49
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : 25.15
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.420

(partial model without unconserved sides chains):
PDB file : Tito_2XDV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2XDV-query.scw
PDB file : Tito_Scwrl_2XDV.pdb: