Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDECVV-------DAAAVVDALAGKGASAIVLRGLL---KESISNAPHLLDAEVGHALRRAVLS-DEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHN--VTFYDALYVALATALDV------PLLTGDSRLAAAPGLPCEIKLVR-
2YMB Chain:A ((97-251))
HKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDIFHK
General information:
TITO was launched using:
RESULT:
Template:
2YMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70374 for 848 contacts (-83.0/contact) +
2D Compatibility (PS) -13949 + (NN) 3403 + (LL) 0
1D Compatibility (HY) -5600 + (ID) 550
Total energy: -87070.0 ( -102.68 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_2YMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YMB-query.scw
PDB file :
Tito_Scwrl_2YMB.pdb
: