Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRIVQFGVSAVAAAAIGIGAGSGIAAAFDGEDEVTGPDADRARAAAV--QAVPGGTAGEVETETG-EGAAAYGVLVTRPDG--TRVEVHLDRDFRVLDTEPADGDGG
4IPB Chain:A ((63-128))
-------------------------------------DRLTPTVYNAFVSGPYANWVVDNVTMVEFPKWQAIIVIKVGQ-DNVDIKYQLFYTPQGILLKTRNVS----
General information:
TITO was launched using:
RESULT:
Template:
4IPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13913 for 375 contacts (-37.1/contact) +
2D Compatibility (PS) -6785 + (NN) -4593 + (LL) 1608
1D Compatibility (HY) -3600 + (ID) 350
Total energy: -27633.0 ( -73.69 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_4IPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IPB-query.scw
PDB file :
Tito_Scwrl_4IPB.pdb
: