Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEPLRVPPSAPARLVVLASGTGSLLRSLLDAA-VGDYPARVVAVGVDR-ECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGRKVTIG
1C3E Chain:A ((2-185))
-------------NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFA--------------------
General information:
TITO was launched using:
RESULT:
Template:
1C3E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143792 for 1472 contacts (-97.7/contact) +
2D Compatibility (PS) -20802 + (NN) -14343 + (LL) 1804
1D Compatibility (HY) -10400 + (ID) 3350
Total energy: -190883.0 ( -129.68 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1C3E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C3E-query.scw
PDB file :
Tito_Scwrl_1C3E.pdb
: