Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPTEYPATAEESVDVITDALLTASRLLVAISAHSIAQVDENITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHRRTEIARIV-EQMAPAERHGLVRALTAFTEAGGEPDARYEIE
1JGS Chain:A ((1-138))
----LFNEIIPLGRLIHMVNQKKDRLLNEYLSPL-------DITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTADEVATLEYLLKKVLP------------
General information:
TITO was launched using:
RESULT:
Template:
1JGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74241 for 827 contacts (-89.8/contact) +
2D Compatibility (PS) -14119 + (NN) -5404 + (LL) 1424
1D Compatibility (HY) -8800 + (ID) 1550
Total energy: -102690.0 ( -124.17 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_1JGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JGS-query.scw
PDB file :
Tito_Scwrl_1JGS.pdb
: