Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGSADERRFEVLRAIVADFVATQEPIGSKSLVERHNLGVSSATVRNDMAVLEAEGYITQPHTSSGRVPTEKGYREFVDRLEDVKPLSSAERRAIQSFLESGVDLDDVLRRAVRLLAQLTRQVAVVQYPTLSTSTVRHLEVIALTPARLLMVVITDSGRVDQRIVELGDVIDDHQLAQLREILGQALEGKKLSAASVAVADLASQLGGAGGLGDAVGRAATVLLESLVEHTEERLLLGGTANLTRNAADFGGSLRSILEALEEQVVVLRLLAAQQEAGKVTVRIGHETASEQMVGTSMVSTAYGTAHTVYGGMGVVGPTRMDYPGTIASVAAVALYIGDVLGAR |
| 1MKM Chain:A ((4-249)) | -----MNTLKKAFEILDFIVKNPGDVSVSEIAEK--FNMSVSNAYKYMVVLEEKGFVLRKKDKRYVP--------------------GYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGET---------------VHLILKDGFEGVYIDKVEGEQSIPMVSRLGMKVDLY--------------------------------------STASGKSILAFVP--EKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGYAVDN--EENEIGIMCVGVPIFDHNGYPVAGVSISGVARKF------------TEEKIEEYSDVLKEKAEEISRKLGY- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -110752 for 1936 contacts (-57.2/contact) +
2D Compatibility (PS) -26383 + (NN) -7073 + (LL) 5856
1D Compatibility (HY) -5600 + (ID) 1800
Total energy: -145752.0 ( -75.29 by residue)
QMean score : 0.385
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