Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEKLKAALPEYAKDIKLNLSSITRSSVLDQEQLWGTLLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGVAQALATIEALSPS--------------
1P8C Chain:A ((10-120))
--------------------------------------------------------------------------------RRELNEKVLSRGTLNTKRFFNLDSAVYRPGKLDVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGSIVIPHLRRAVGFLEELREMEKNGETIS
General information:
TITO was launched using:
RESULT:
Template:
1P8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25118 for 632 contacts (-39.7/contact) +
2D Compatibility (PS) -10606 + (NN) -4270 + (LL) 6804
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -35690.0 ( -56.47 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1P8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P8C-query.scw
PDB file :
Tito_Scwrl_1P8C.pdb
: