Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MTVGTLVASVLPATVFEDLAYAELYSDPPGLTPLPEEAPLIARSVAKRRNEFITVRHCARIALDQL-GVPPA--PILKGDKGEPCWPD-------GMVGSLTHCAGYRGAVVGRRDAVRSVGIDAEPHDVLPNGVLDAISL-------PAERADM--PRTMPAALHWDRILFCAKEATYKAWFPLTKRWLGFEDAHITFETDSTGWTGRFV---SRILIDGSTLSGPPLTTLRGRWSVERGLVLTAIVL---------------------------------------- |
| 2BYD Chain:A ((18-318)) | LYFQGHMEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAAEPE---LQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAI----GVGLGFELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVALRKQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEEIPIRNGTK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2BYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68871 for 1573 contacts (-43.8/contact) +
2D Compatibility (PS) -23836 + (NN) -8687 + (LL) 480
1D Compatibility (HY) -2400 + (ID) 1650
Total energy: -104964.0 ( -66.73 by residue)
QMean score : 0.176
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