Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MTKTFSHPHFFRSVLRWLQVGYPEGVPGPDRVALLSLLRSTPLTEEQIGEVVRHFTENGSPAVADRVIDRDEIAEFISEVTHHDAGPENIQRVAGILAAAGWPLAGVDVGESESGSDRAPASQG
1WJT Chain:A ((1-103))
GSSGSSGMGLEEELLRIAKKLEKMVSRK-KTEGALDLLKKLNSCQMSIQLLQTT--------------------RIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL---LDSPRTTKGERESGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1WJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55578 for 653 contacts (-85.1/contact) +
2D Compatibility (PS) -10826 + (NN) -8426 + (LL) 1392
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -76888.0 ( -117.75 by residue)
QMean score : 0.757
(partial model without unconserved sides chains):
PDB file :
Tito_1WJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WJT-query.scw
PDB file :
Tito_Scwrl_1WJT.pdb
: