Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MTVTVYTKPACVQCSATSKALDKQGIAYQKVDISLDSEARDYVMAL--GYLQAPVVVAGN-DHWSGFRPDRIKALAGAALTA---
2LQO Chain:A ((1-88))
MVTAALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKLVKIAGLEHH
General information:
TITO was launched using:
RESULT:
Template:
2LQO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40436 for 533 contacts (-75.9/contact) +
2D Compatibility (PS) -8748 + (NN) -2339 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 1050
Total energy: -54573.0 ( -102.39 by residue)
QMean score : 0.649
(partial model without unconserved sides chains):
PDB file :
Tito_2LQO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LQO-query.scw
PDB file :
Tito_Scwrl_2LQO.pdb
: