Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTTQATPLTPVISRHWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSG----------FDLELVVHAGAGAYICG--EETALLDSLEG-----RRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRR----WTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGGGCPFDPRDSML--VANGVDA |
| 2VFR Chain:A ((4-421)) | ------FMSDITVTNWAGNITYTAKELLRP---HSLDALRALVADSARVRVL---------------GSGHSFN------EIAEPGDGGVLLSLAGLP----SVVDVDTAARTVRVGGGVRYAELARVVHA----RGLALPNM----ASLPHISVAGSVATGTHGSGVGNGSLASVVREVELVTADGSTVVIARGDERFGGAVTSLGALGVVTSLTLDLEPAYEMEQHVFT---ELPLAGLDPATFETVMAAAYSVSLFTDWRAPGFRQVWLKRRTDRPLDGFPYAAPAAEKMHPVPGMPAVNCTEQFGVPGPWHERLPHFRAEFTPSSGAELQSEYLMPREHALAALHAMDAIRETLAPVLQTCEIRTVAADAQWLSPA----YGRDTVAAHFTWVEDTAAVLPVVRRLEEALVPFAARPHWGKVFTVPAGELRALYPR-LADFGALAGALDPAGKFTNAFVRGVLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -42344 for 3222 contacts (-13.1/contact) +
2D Compatibility (PS) -40519 + (NN) -4376 + (LL) 1928
1D Compatibility (HY) -800 + (ID) 2750
Total energy: -88861.0 ( -27.58 by residue)
QMean score : 0.212
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