Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKRKMLAASLLLWMFSLTAQADCAVLGPGEDPCAGPVLGPTVCECP
2GYP Chain:A ((2-33))
VSKLSQLQTELLAALLESLSKEALIQALGEW-----------------
General information:
TITO was launched using:
RESULT:
Template:
2GYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6774 for 111 contacts (-61.0/contact) +
2D Compatibility (PS) -3587 + (NN) -5934 + (LL) 152
1D Compatibility (HY) -400 + (ID) 300
Total energy: -16843.0 ( -151.74 by residue)
QMean score : 0.020
(partial model without unconserved sides chains):
PDB file :
Tito_2GYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GYP-query.scw
PDB file :
Tito_Scwrl_2GYP.pdb
: