Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRDAALRYPNILFDLDGTLTDPREGITRSVQFALARLGIDEP--DLARLEHFIGP-----------P---LLQC----F---MQTYGFDEARAWEAVNHYRERFRVTGLYENRVFDGIPELLEALVGRGHTLYVATSKPGVFAREIARHFAFDRHFKAIYGSELDGTRTHKEELIRHLLDSEGLAAEHCLMIGDRM-HDLLGASRNGVACIGVGYGFGSEDELRAHQPTHYCADLAALRQVLESH
3QNM Chain:A ((3-233))
-----LKYKNLFFDLDDTIWAFSRNARDTFEEVYQKYSFDRYFDSFDHYYTLYQRRNTELWLEYGEGKVTKEELNRQRFFYPLQAVGVEDE---ALAERFSEDFFAIIPTKSGLMPHAKEVLEYLAP-QYNLYILSNGFRELQSRKMRSAGVDRYFKKIILSEDLGVLKPRPEIFHFALSATQSELRESLMIGDSWEADITGAHGVGMHQAFYNVTERT---VFPFQPTYHIHSLKELMNLLE--
General information:
TITO was launched using:
RESULT:
Template:
3QNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153341 for 1652 contacts (-92.8/contact) +
2D Compatibility (PS) -22908 + (NN) -14593 + (LL) 1168
1D Compatibility (HY) -12000 + (ID) 2350
Total energy: -204024.0 ( -123.50 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_3QNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QNM-query.scw
PDB file :
Tito_Scwrl_3QNM.pdb
: