Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADALDSLRLMRTQERPAQVFVRGQGSWLWDSDGRAFLDFTQGLAVNCLGHSPSVLVQALARQARELVSAGPGLLNRPVLALAQRLCLAT--GSDQAYFLTSGAEANEAAIALARKWGRLHRGGAQRIVSTVNSIHGRTPGTLTACGKPAQHGLEGFARV-------PFN---------------DLDAMAAAIDEET----VAVMLEPVQGDAGVIPATLDYLRGIERLCRQRGVLLILDEVQTGIGRCGALLAEELYGVRADIVTLGKGLGAGVPLSALLARGNACCFEPGDQLG-----THHGNALMTAAGLAVLNTVLEPGFLEQVREQGTHLRDGLARVARRYG-HGPLRGQGLFWGLPLIGQR---APA------VVRAAFGEGLLINAPQ----PHCLRFSPALTVSRANVDEMLRRLERALARVANRHEEVA |
2DKB Chain:A ((27-431)) | ------------------MIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT-----GKYEIVGFAQSWHGMTGAAASATYSAGRKGV-GPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVT--SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2DKB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -213406 for 3099 contacts (-68.9/contact) +
2D Compatibility (PS) -39412 + (NN) -18727 + (LL) 2520
1D Compatibility (HY) -26000 + (ID) 7050
Total energy: -302075.0 ( -97.47 by residue)
QMean score : 0.486
|
|
|