Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDCLFCKIVAGEVPARKFYEDEEVVAFHDIGPQAPVHFLVIPKRHIPTLEHLTEADRPLAGHILFTAQRLAREQG-CEEGFRVVMNCNDLGGQTVHHIHMHVLGQRQMHWPPG
3N1T Chain:F ((4-108))
-ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIAMHLLGGRPLGPMLA
General information:
TITO was launched using:
RESULT:
Template:
3N1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90341 for 734 contacts (-123.1/contact) +
2D Compatibility (PS) -11552 + (NN) -8481 + (LL) 208
1D Compatibility (HY) -8000 + (ID) 2200
Total energy: -120366.0 ( -163.99 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3N1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N1T-query.scw
PDB file :
Tito_Scwrl_3N1T.pdb
: