Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHSPVKQMLKEAGLKMSLARLKVIDALWEASGEQGRVPIRTLHRRLSETGTPLSLVSIRQVLGRLVESGLVTLDE---QDVYSP--GKASWGGAAGSAAPERRAAANEQRL-------------------------
1OKR Chain:A ((4-123))
------------KTYEISSAEWEVMNIIWMK----KYASANNIIEEIQMQ-KDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK
General information:
TITO was launched using:
RESULT:
Template:
1OKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40252 for 554 contacts (-72.7/contact) +
2D Compatibility (PS) -9814 + (NN) -1957 + (LL) 916
1D Compatibility (HY) -5200 + (ID) 600
Total energy: -56907.0 ( -102.72 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_1OKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKR-query.scw
PDB file :
Tito_Scwrl_1OKR.pdb
: