Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDLGKMVAKFKAEGNGRSIEDFVKAELAEVVGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDL--VKRAS-LLRRDSVHGPFDGTITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADDKIISAASCTTNAIVPVLKAVNDQYGIVNGHVETVHSYTNDQNLIDNFHKGSRRGRSAPLNMVITETGAATAAAKALPVLKGKLTGNAIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEAT-ICNDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR |
| 1RM5 Chain:A ((4-332)) | ----------------------------------------------------------------------------------------------------------------VAINGFGRIGRNFLRCW----HGRKDSPLDVVVI-----NDTGGVKQASHLLKYDSILGTFDADVKT-AGDSAISVDGKVIKVVSDRNPVNLPWGDMGID--LVIEGTGVFVDRDGAGKHLQA-GAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAAHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNE--LKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RM5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -198814 for 2696 contacts (-73.7/contact) +
2D Compatibility (PS) -35648 + (NN) -18146 + (LL) 8596
1D Compatibility (HY) -24400 + (ID) 6800
Total energy: -275212.0 ( -102.08 by residue)
QMean score : 0.496
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