Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVPDATIAALDKSGSLIKLFQRVGPPELARSLIASIAGRTTMQRYQARNALIRSLINNPLGTQTDNWIYFPTITFFDICADLADAAGRLGFAAAGATGVASQAIQGPFSGVGATGVNPTDLPSIAFGDQLKLLNKDPATVTKYSNPLGDLGAYLSQLSPQDKLNQAQTLVGQPISTLFPDAYPGNPPSRAKVMSAAARKYDLTPQLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIKYELFTDLLGQPVRRGLSRKAVATLLASDEFNIFATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGNPRNWPRDNVRALAS--EYTSRPWDDNLSPGWPMFVDDAYATFLDPGMRFP--- |
4CFP Chain:A ((15-341)) | --------------DTNGFDILMGQFAHNIENIWG--------------------FKEV-----------VIAGPKDYVKYTDQYQ-TRSHINFDDG----------TITIETIAGTEPAAHLRRAIIKTLLMGDDPSSVD-LYSDV--DDITISKEP-FLYG----QVVDNTGQPIRWEGRASNFADYLLKNRLKSRSNGLRIIYSVTIN-MVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTQSSFNP------------YAVSRSDALGLMQVVQHTAGKDVFRS--------QGKSGTPSRSFLFDPASNIDTGTAYLAMLNNV-YLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLTTRHPSAESRRYLYKVNTAQKSYRRR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4CFP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -55640 for 2626 contacts (-21.2/contact) +
2D Compatibility (PS) -33256 + (NN) 1473 + (LL) 5076
1D Compatibility (HY) -9200 + (ID) 3100
Total energy: -94647.0 ( -36.04 by residue)
QMean score : 0.205
|
|
|