Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQ----AEALKDAGVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
4TYP Chain:B ((1-186))
MNIVLMGLPGAGKGTQAEKIVAKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLS------GFLLDGFPRTVAQAEALEEILEEMGRKLEHVIHIDVRQEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVAKRLEVNMKQMKPLLAFY---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4TYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56274 for 1265 contacts (-44.5/contact) +
2D Compatibility (PS) -19601 + (NN) -12384 + (LL) 2752
1D Compatibility (HY) -15600 + (ID) 4550
Total energy: -105657.0 ( -83.52 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_4TYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TYP-query.scw
PDB file :
Tito_Scwrl_4TYP.pdb
: