Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFERVREDIQSVFHRDPAARNALEVLTCYPGLHAVWLHRLAHGLWTSGWKWLARLVSNFGRWMTGIEIHPGARIGRRFFIDHGMGIVIGETAEIGDDVTLYQGVTLGGTTWNKGKRHPTLGNNVVVGAGAKVLGPFTVGEGAKVGSNAVVTKEVPPGATVVGIPGRIIMREDSEQQAKRQAMAEKLGFDAYGVSQDMPDPVARAIGQLLDHLQAVDGRLEGMCQALTALGSDYCAKDLPVLREEDFAGVKDEDGNPAA
3GVD Chain:D ((80-254))
MIVSAARDILAVRLRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWAQDRKALAIYLQNQVSVAFGVDIHPAATIGCGIMLDHATGIVIGETAVVENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQSVPAHTTAAGVPARIVGKPESDK-----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118699 for 1443 contacts (-82.3/contact) +
2D Compatibility (PS) -18651 + (NN) -8941 + (LL) 4964
1D Compatibility (HY) -12400 + (ID) 3700
Total energy: -157427.0 ( -109.10 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_3GVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVD-query.scw
PDB file :
Tito_Scwrl_3GVD.pdb
: