Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGQDKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQ--VLAVDTASGLLGAEEERRLLASKVKEVPPDSDSLAIIRSGKQSLLSAGE-----------LAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLM------APASEEEVREQLGFPLVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDDQALP----VGEILLGGQEVFDYEHKYQAGAVRE-VFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIERCKGARKARS |
| 3RFC Chain:A ((20-379)) | ----KIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHAD------DPARIALHRSGRGVALLPGAQQQQLRPIQQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGN-AVPHASVCGEVVV------------------EIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELALERHTDDQLLRS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RFC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158905 for 2582 contacts (-61.5/contact) +
2D Compatibility (PS) -34832 + (NN) -15436 + (LL) 1524
1D Compatibility (HY) -32400 + (ID) 6050
Total energy: -246099.0 ( -95.31 by residue)
QMean score : 0.436
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