Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELNLTTDEARVSYGIGRQLGDQLRENPVPGMTLDAVLAGLSDAFAGIDSRVSGEALSASFQVIRERMQAEAQAKAEAAAGEGRAYLAENAKREGVTVLPSGLQFEVLSTGEGAK-PSREDTVRTHYHGTLIDGTVFDSSYQRGQPAEFPVGG--VIAGWVEALQLMNAGSKWRLHVPSELAYGGQA-VGSIPPHSVLVFDVELLEIL
1FKI Chain:B ((1-106))
------------------------------------------------------------------------------------------------------GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL-
General information:
TITO was launched using:
RESULT:
Template:
1FKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59856 for 749 contacts (-79.9/contact) +
2D Compatibility (PS) -10995 + (NN) -1997 + (LL) 7204
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -74794.0 ( -99.86 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_1FKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FKI-query.scw
PDB file :
Tito_Scwrl_1FKI.pdb
: