Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRIAVVGAAGRMGKNLIEAVQQTGGAAGLTAAVDRPDSTLVGADAGELAGLGRIGVPLSGDLGKVCEEFDVLIDFTHPSVTLKNIEQCRKARRAMVIGTTGFSADEKLLLAEAA---KDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEIIEAHHRHKVDAPSGTALRMGEVVAQALGRDLQE--VAVYGREGQTGARARETIGFATVRAGDVVGDHTVLFAAEGERVEITHKASSRMTFARGAVRAALWLEGKENGL-YDMQDVLGLR
1P9L Chain:A ((1-244))
-MRVGVLGAKGKVGTTMVRAVAAADD-LTLSAELDAGDPL---------------------SLL-TDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFF---DSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGAD-VDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAER-PGLTVGLEPLLDL-
General information:
TITO was launched using:
RESULT:
Template:
1P9L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149840 for 1899 contacts (-78.9/contact) +
2D Compatibility (PS) -25534 + (NN) -9676 + (LL) 1272
1D Compatibility (HY) -12800 + (ID) 3900
Total energy: -200478.0 ( -105.57 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1P9L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P9L-query.scw
PDB file :
Tito_Scwrl_1P9L.pdb
: