Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKP-NVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTT---KPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENKIIDDNIIHASSIESSLNLVS---------DVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPL------ESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
3NZB Chain:X ((1-205))
MNQQKSLTLIVAL-TTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDL-GNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIY----KDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRD
General information:
TITO was launched using:
RESULT:
Template:
3NZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124896 for 1365 contacts (-91.5/contact) +
2D Compatibility (PS) -19783 + (NN) -2734 + (LL) 116
1D Compatibility (HY) -21200 + (ID) 3400
Total energy: -171897.0 ( -125.93 by residue)
QMean score : 0.689
(partial model without unconserved sides chains):
PDB file :
Tito_3NZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NZB-query.scw
PDB file :
Tito_Scwrl_3NZB.pdb
: