Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------MRNHTMVTEFILLGIPETEGLETALLFLFSS--------FYLCTLLGNVLILTAIISSTRLHTPMYFFLGNLSIFDLGFSSTTVPKMLFYLSGNSHAISYAGCVSQLF---FYHFLGCTECFLYTV--MACDRFVAICF----------------------------------PLRYTVIMNHRVCFM---------LATGTWMIGCVHAMILT-PLTFQLPYCGPNKVGYYFCDIPAVLPLACKDTSLAQRV--GFTNVGLLSL-ICFFLILVSYTCIGISISKIRSAEGRQRAFSTCSAHLTAILCAYG--------PVIVIYLQPNPSALLGSIIQILNNLVTPMLNPLIYSLRNKDVKSDQP--------------------------------------- |
| 1WCD Chain:J ((11-431)) | IVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDT-GSGLIVFFPGFPGSIVGAHYTLQGNGNYKFDQMLLTAQNLPAS--YNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLPTSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGLVLGATIYLIGFDGTTVITRAVAANNGLTTGTDNLMPFNLVIPTNEITQPITSIKLEIVTSKS-GGQAGDQMSWSARGSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIP--NPELAKNLVTEYGRFDPGAMNYTKLILSERDRLGIKTVWPTREYTDFREYFMEVAD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1WCD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -289031 for 2141 contacts (-135.0/contact) +
2D Compatibility (PS) -31218 + (NN) 5970 + (LL) 1004
1D Compatibility (HY) -4400 + (ID) 2500
Total energy: -320175.0 ( -149.54 by residue)
QMean score : 0.100
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