Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MVKD-------EKSKTLFEVEGAVTALLPAAEFRVKLDNEH-----EIICHVSGKVRRSK-IRIIIGDRVLVEMSIYDRNAKK------GRIIRRLKGTSDRTISK
3F62 Chain:A ((18-125))
GAMVETKCPNLDIVTSSGEFHCSGCVEHMPEFSYMYWLAKDMKSDEDTKFIEHLGDGINEDETVRTTDGGITTLRKVLHVTDTNKFAHYRFTCVLTTLDGVSKKNIWL
General information:
TITO was launched using:
RESULT:
Template:
3F62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22959 for 510 contacts (-45.0/contact) +
2D Compatibility (PS) -9107 + (NN) 1710 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -34306.0 ( -67.27 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_3F62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F62-query.scw
PDB file :
Tito_Scwrl_3F62.pdb
: