Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKMIGFEKPFKLEEGNLFK-VYEQRKPTPENDDILVKVNSISVNPVDTKQRQMKVT---QAPRVLGFDAIGTVEAIGPDVTLFSPGDVVFYAGS-------------------------PNRQGSNATYQLVSEAIVAKAPHNISANEAVSLPLTGITAYETFFDTFKISHNPSENVGKSVLIINGAGGVGSIATQIAKRYGLTVITTASRQETTEWCEKMGADIVLNHKED-LVRQFKEKEIPLVDYIFCTYNTDLYYNTMIELIKPLGHITTIVAFNEDQDL--NALKLKSITFTHEFMFARPIHRTPDMIKQHEYLEDITKNIELGHYQPTTTQVFEGLSPENLYQAHQLLEKQSMIGKLVINI |
| 3S2E Chain:A ((3-338)) | MKAAVVRAFGA-----PLTIDE-VPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLK-VTDTR------PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTA-VSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRG------------SIVGTRSDLQESLDFAAHGDVKATV-STA-KL--DDVNDVFGRLREGKVEGRVVLDF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3S2E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200791 for 2715 contacts (-74.0/contact) +
2D Compatibility (PS) -32959 + (NN) -10953 + (LL) 1144
1D Compatibility (HY) -6400 + (ID) 2800
Total energy: -252759.0 ( -93.10 by residue)
QMean score : 0.506
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