Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNYSYKNIQAIDFTQLNDEEKLLVLEFRNHP-NTALWMYSA-NISLKTHLQFIEDLKNSPSHRYFLFKEESVYLGVGSITKINFF--HKHGYLGIYKNPFLK--NKGGTILKALERIAFEEFQLNSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKGYNDQSPLKL
2GE3 Chain:A ((6-169))
----------DTVTIKPIRAEHVESFHRALDAVSRERKYLSFLEAPPLEAVRAFVLDMIEN-DHPQFVAIADGDVIGWCDIRRQDRATRAHCGTLGMGILPAYRNKGLGARLMRRTLDAAHE-FGLHRIELSVHADNARAIALYEKIGFAHEGRARDAVSIDGHYIDSLNMAIIFG----------
General information:
TITO was launched using:
RESULT:
Template:
2GE3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51079 for 1114 contacts (-45.9/contact) +
2D Compatibility (PS) -16796 + (NN) -2590 + (LL) 696
1D Compatibility (HY) -2800 + (ID) 1700
Total energy: -74269.0 ( -66.67 by residue)
QMean score : 0.371
(partial model without unconserved sides chains):
PDB file :
Tito_2GE3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GE3-query.scw
PDB file :
Tito_Scwrl_2GE3.pdb
: