Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKTNDVLLRNVTKVVAFIIFLFSLHLFFAGHYNPGGG------FVAGLTTAGAITLTLLAYDTKTVASMLNINTIMLTGVGLVFALGTGMIGIFTGDPFLTH------KFGHVDLPILGDTALHTATLFDLGVYLVVVGVTLTIIQTIGESD
1HKY Chain:A ((1-86))
-------------------------------DYKDDDDKVKLTCYQNGVSFTGGKAISEAKAASSQACQELCEKDAKCR----FFTLASGKCSLFADDAALRPTKSDGAVSGNKRCILLED--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1HKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45803 for 445 contacts (-102.9/contact) +
2D Compatibility (PS) -7965 + (NN) -3790 + (LL) 6232
1D Compatibility (HY) -800 + (ID) 650
Total energy: -52776.0 ( -118.60 by residue)
QMean score : 0.035
(partial model without unconserved sides chains):
PDB file :
Tito_1HKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HKY-query.scw
PDB file :
Tito_Scwrl_1HKY.pdb
: