Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKKIIAVDLDGTLLHNNNTISDYTADTLRKVQAQGHKVIITTGRPYRMALAHYLRLDLKT-PMINFNGALTHIPEKKWAFERSATIDKKLLLETLNLSDAIQADFIASEYRKNFYITMDNRDKINPQLFGVNEITDKMALDVTKITRNPNALLMQTRHKDKYELAKELRQHFNHELEVDSWGGPLNILEFSPKGVNKAYALKHLLKSLNLSQENLIAFGDEHNDTEMLAFAHTGYAMKNANPTLLPYADQQIQWTNEEDGVAKTLEKLLL---- |
1NF2 Chain:A ((1-267)) | -MYRVFVFDLDGTLLNDNLEISEKDRRNIEKLS-RKCYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEG--VILNEKIPPEVAKDIIEYIKPLNVHWQAY-IDDVLYSEKDNEEIKSYARHSNVDYRVEPNLSELVSKMGTTKLLLIDTPERLDELKEILSERFKDVVKVFKSFP--TYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEASDIVTL-TNNDSGVSYVLERISTDCLD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68346 for 2206 contacts (-31.0/contact) +
2D Compatibility (PS) -28599 + (NN) -12963 + (LL) 948
1D Compatibility (HY) -12000 + (ID) 3250
Total energy: -124210.0 ( -56.31 by residue)
QMean score : 0.435
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