Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLSSEEIIKMLPHRYPFLMVDRV---QSYKKGIIECRKNITINEPYFQGHFPQRPIVPGVLMIEMAAQSAALLYILDALDGSLPSLDELTAEKIAEKVGYLASVKNFKFKKIVTPGDQLNITCKSQSKLGHLLEIQVVIRDENKKEVASGRMLVSENGN
3DP2 Chain:E ((15-119))
------EHILQILPHRYPMLLVDRITELQANQK--IVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFL--------AFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
General information:
TITO was launched using:
RESULT:
Template:
3DP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47062 for 604 contacts (-77.9/contact) +
2D Compatibility (PS) -10804 + (NN) -4893 + (LL) 944
1D Compatibility (HY) -12000 + (ID) 2500
Total energy: -76315.0 ( -126.35 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_3DP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP2-query.scw
PDB file :
Tito_Scwrl_3DP2.pdb
: