Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MNKKIAGIGLASIAVLSLAACGHRGASKSGGKSDSLKVAMVTDTGGVDDKSFNQSGWEGMQAWGKKNGLKKGAGFDYFQSAS-ESDYATNLDTAVSSGY-KLIFGIGFSLHDAIDKAADNNKDVNYVIVD--DVIKGKDNVASVVF----ADNESAYLAGIAAAKTTKTKTVGFVGGMESEVITRFEKGFEAGVKSVDKSIKIKVDYAGSFGDAAKGKTIAAAQYASGADIVYQVAGGTGAGVFSEAKSRNESLKEADKVWVLGVDRDQAAEGKYTSKDGKASNFVLASSIKEVGKSVELIATKTSKGKFPGGNVTTYGLKDGGVDIATTNLSDDAVKAIKEAKAKIISGDIKVPSK |
| 1JX6 Chain:A ((4-341)) | GYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKP--TQRPIKISVVYP--GQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDALAELGRE-----DIMINGWGGGSAELDAIQKGD---LDITVMRMNDDTGIAMAEAIKWDLEDKPVPTVYSG------DFEIVTKADSPERIEALKKRAFR--------YSD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JX6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16912 for 2750 contacts (-6.1/contact) +
2D Compatibility (PS) -35489 + (NN) -17819 + (LL) 488
1D Compatibility (HY) -5200 + (ID) 1900
Total energy: -76832.0 ( -27.94 by residue)
QMean score : 0.371
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