Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIGIVGTNSNKSTNRQLLQYMQQHFADKAEIELIEVKDLPLFNKPADKN-VPQVILDIAAKIEEADGVIIGTPEYDHSIPSALMSVLAWLSYGI-YPLLNKPVMITGASYGTLGSSRAQLQLRQILNAPELKASVLPD-EFLLSHSLQAFDKDGNLHDIETSQKLDAIFDDFRLFVKITGKLSNARDLLQKEAENFDWESL
1RTT Chain:A ((7-180))
IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFGTARAQYHLRQTLV--FLDVHPLNKPEVMISSAQNAFDAQGRLLDDKARELIQQQLQALQL---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RTT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124810 for 1415 contacts (-88.2/contact) +
2D Compatibility (PS) -19148 + (NN) -8491 + (LL) 2048
1D Compatibility (HY) -7600 + (ID) 2650
Total energy: -160651.0 ( -113.53 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_1RTT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RTT-query.scw
PDB file :
Tito_Scwrl_1RTT.pdb
: