Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALFFTFLKVSQVIFLVLLIAYASFLVISLVIGGVHLYEKNERKKSLTRNKEKIPISIIVPAYNESTTIV-SSIDSLLHLDYEAYEIIVVDDGSSDNTSDVLKEEFALMKISNTIDSIIATQTCKDVFQRQVGKVKLTL-----IVKENGGKGDAL----NMGINAANYDYFLCLDADS-MLQVDSLSQISKSIQVDPTVIAVGGLVQVAQGVKIEQGKVASYRLPWRIIPCAQALEYDSSFLGARIFLDYLRANLIISGAFGLFKKDLVKAVGG---YDT-QTLGEDMELVMKLHFFCRNNNIPYRICYETDA-VCWSQAPTNLGDLRKQRRR |
| 2BO4 Chain:A ((2-220)) | -------------------------------------------------------SLVVFPFKHEHPEVLLHNVRVAAAH--PRVHEVLCIGYERDQTYEAVERAAPEIS------------------RA--TGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAAD--FGYGLVRHYFPRASTDAMI-------------TWMITR-TGF-AL--LWP-HTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQ------QGVSIYECYIPEGKAHRLYGGLDDLRTMLVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2BO4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141616 for 1596 contacts (-88.7/contact) +
2D Compatibility (PS) -21748 + (NN) -7778 + (LL) 8824
1D Compatibility (HY) -1600 + (ID) 1000
Total energy: -164918.0 ( -103.33 by residue)
QMean score : 0.324
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