Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVATLIIIRGNSASGKSKIAKQLQAELGENTLLLSQDYLRREMLGTKDG--------ENTTTIPLLINLLNYGYHNC---SYIILEGILRSDWYTPVWKHILKHNPNNTYAYYYDLSFQETVKRHSTRLKSLEFGEDSLARWWLEKDF-------LKEIPEKILTKAMSLEDVKKLIMTDVLP
1LY1 Chain:A ((1-152))
-MKKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT-KAVPIDVLRSMYKSMREYLGLPVY----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LY1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50966 for 918 contacts (-55.5/contact) +
2D Compatibility (PS) -14361 + (NN) -5118 + (LL) 2380
1D Compatibility (HY) -2000 + (ID) 1100
Total energy: -71165.0 ( -77.52 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_1LY1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LY1-query.scw
PDB file :
Tito_Scwrl_1LY1.pdb
: