Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIRFAIIGTNWITDRFLESAADIEDFQLTAVYSRSAERAGEFAAKHNAAHAFSDLQEMAASDCFDAVYIASPNALHKEQAVLFMNHGKHVLCEKPFASNTKETEEMISAAKANGVVLMEAMKTTFLPNFKELKKHLH--KIGTVRRFTASYCQYSSRYDAFRSGTVLNAFQPELSNGSLMDIGVYCIYPAVVLFGA-PKDVKANGYAL------SSGVDGEGTVILSYDG-FEAVLMHSKIST--SYAPAEIQGEDGTIVIDTIHRPERVEIRYRDGRL----ENIAIPDPKPAMFYEAEEFVTLIKENKLESEENTFERSLTTAKIMEEARKQMGIVYPADQA
4HKT Chain:A ((3-330))TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGC-E-VRTIDAIEAAADIDAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDGRIGEVEMVTITSRDPSA---------PPVDYI-KRSGGIFRDMTIHDFDMARFLLGEEPVSVTATAAVLIDKAIGDAGDYDSVSVILQTASGKQAIISNSRRATYGYDQRIEVHGSKGAVAAENQRP-VSIEIATGDGYTRPPLHDFFMTRYTEAYANEIESFIAAIEKGA--EIAPSGNDGLAALALADAAVRSVAEKRQISI-


General information:
TITO was launched using:
RESULT:

Template: 4HKT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1692 -96126 -56.81 -308.10
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -56.81
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.437

(partial model without unconserved sides chains):
PDB file : Tito_4HKT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4HKT-query.scw
PDB file : Tito_Scwrl_4HKT.pdb: