Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTSSDWLPTACILCECNCGIVVQVDDRRLARIRGD------KAHPGSAGYTCNKALRLDHYQNNRARLSSPMRRRA---DGTYEEIDWDTAIVEIAEGFKQIRDTHGGDKIFYYGGGGQGNHLGGAYSGAFLKALGSRYRSNALAQEKTGEAWVDFQLYGG----HTRGEFENAEVSVFVGKNPWMSQSFPRARVVLNEIAKDPGRSMIVIDPVVTDTAKMADFHLRVQPGCDAWCLAALAAVLVQENLCNEAFLAAHVHGV-------------------------------------------------------------------------------------------------DTVRAAL-QEVPVADYAQRCGVDEELLRAAARRIGTAASVSVFEDLGIQQAPNSTVCSYLNKLLWILTGNFAKKGGQHLHSSFAPLFSQVSGRTPV-T--GAPI-------IAGLIP----G----------NVVPEEIL-------TEHPDRFRAMIVERGNPAHSLADSAACRAAF-QALELMVVVDVAMTETARLAHYVLPAASQFEKPEATFFNFEFPRNGFQLRRPLFPPLPGTLPEPEIWARLVRALGVVDEA-DLRPLREAAAQGRQAYTEAFLAAAATNPTVAKLTAYVLYETLGPTLPDGLAGAAALWGLAQKTAMAYPDAVRRAGHADGNALFDAILERPSGVTFTVH-NYEDDFALISHPDHKIALEIPEMLA--EIRSLTQTPSRLTTPQLPIVLSVGERRAYTANDIFR-DPSWRK-RDANGALRVSVEDAQALGLADGCLARITTAAGSAEATVEVTETMLAGHAALPNGFGLDYTGDDGRTVVAGVAPNALTST---------------RWRDPYAGTPWHKHVPAAIRRADAESPIWYPKWAILPARGVLA |
| 4YDD Chain:A ((26-898)) | ---KKTRGAHLVNCTGACPHFVYSKDGVVMREEQSKDIAPMPNIPEYNPRGCNKGECGHDYMYGPHRIKYPLIRVGERGEGKWRRATWEEALDMIADKCVDTIKNHAPDCISVYSPVPAVSPVSFSAGHRFAHYIGAHAHTFYDWYGDHPT--GQTQTCGVQGDTCETADWFNSKYIILWGSNPTQTRIPDA-H-FLSEA-QLNGAKIVSISPDYNSSTIKVDKWIHPQPGTDGALAMAMAHVIIKEKLYDAHSLKEQTDLSYLVRSDTKRFLREADVVAGGSKDKFYFWNAKTGKPVIPKGSWGDQPEKKGSPVGFLGRNTFAFPKGYIDLGDLDPALEGKFNMQLLDGKTVEVRPVFEILKSRLMADNTPEKAAKITGVTAKAITELAREFATAKPSMIICGGGTQHWYYSDVLLRAMHLLTALTGTEGTNGGGMNHYIGQWKPAFVAGLVALAFPEGVNKQRFCQTTIWTYIHAEVNDEIISSDIDTEKYLRDSITTGQMPNMPEQGRDPKVFFVYRGNWLNQAKGQKYVLENLWPKLELIVDINIRMDSTALYSDVVLPSAHWYEKL-DLNVTSE--HSYINMTEPAIKPMWESKTDWQIFLALAKRVEMAAKRKKYEKFND----EKFKWVRDLS-NLWN--QMTMDGKLAEDEAAAQYILD--------NAP--QSKGITIQMLREKPQRFKSN-WTSPL--KEGVPYTPFQYFVVDKKPWPTLTGRQQFYLDHDTFFDMGVELPTYKAPIDADKYPFRFNSPHSRH-SVHSTFKDNVLMLRLQRGGPSIEMSPLDAKPLGIKDNDWVEAWNNHGKVICRVKIRNGEQRGRVSMWHCPELYMDLL-------TGGSQSVCPVRINPTNLVGNYGHLFFRPNYYGPAGSQRDVRVNVKRYIGATPIS-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YDD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -258341 for 6576 contacts (-39.3/contact) +
2D Compatibility (PS) -75417 + (NN) -25685 + (LL) 4476
1D Compatibility (HY) -13200 + (ID) 6100
Total energy: -374267.0 ( -56.91 by residue)
QMean score : 0.351
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