Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
3KUD Chain:A ((1-165))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ------------------------
General information:
TITO was launched using:
RESULT:
Template:
3KUD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89972 for 1383 contacts (-65.1/contact) +
2D Compatibility (PS) -18042 + (NN) -5341 + (LL) 532
1D Compatibility (HY) -23200 + (ID) 8250
Total energy: -144273.0 ( -104.32 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_3KUD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KUD-query.scw
PDB file :
Tito_Scwrl_3KUD.pdb
: