Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALEKSLVRLLLLVLILLVLGWVQPSLGKESRAKKFQRQHMDSDSSPSSSSTYCNQMMRRRNMTQGRCKPVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSNSSMHITDCRLTNGSRYPNCAYRTSPKERHIIVACEGSPYVPVHFDASVEDST
11BG Chain:A ((1-124))
----------------------------KESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV----
General information:
TITO was launched using:
RESULT:
Template:
11BG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32594 for 788 contacts (-41.4/contact) +
2D Compatibility (PS) -13790 + (NN) -10467 + (LL) 3316
1D Compatibility (HY) -11600 + (ID) 4500
Total energy: -69635.0 ( -88.37 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_11BG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-11BG-query.scw
PDB file :
Tito_Scwrl_11BG.pdb
: