Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLLILTFVAAALAAPFDDDDKIVGGYNCEENSVPYQVSLNSGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS
3FP8 Chain:E ((1-223))
-----------------------IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDAGGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN-
General information:
TITO was launched using:
RESULT:
Template:
3FP8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128999 for 1930 contacts (-66.8/contact) +
2D Compatibility (PS) -24304 + (NN) -12396 + (LL) 1716
1D Compatibility (HY) -29200 + (ID) 8900
Total energy: -202083.0 ( -104.71 by residue)
QMean score : 0.804
(partial model without unconserved sides chains):
PDB file :
Tito_3FP8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FP8-query.scw
PDB file :
Tito_Scwrl_3FP8.pdb
: