Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGGEAPQEPQS
3CU8 Chain:B ((1-230))
MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKT--E--EKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS----------------
General information:
TITO was launched using:
RESULT:
Template:
3CU8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82739 for 1774 contacts (-46.6/contact) +
2D Compatibility (PS) -24523 + (NN) -11379 + (LL) -212
1D Compatibility (HY) -26800 + (ID) 8400
Total energy: -154053.0 ( -86.84 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_3CU8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CU8-query.scw
PDB file :
Tito_Scwrl_3CU8.pdb
: